| commit | author | age | ||
| 8ab985 | 1 | ####### Vesicle definitions ########### |
| SP | 2 | # nshell is a number of divisions of dipyramid |
| 3 | nshell=10 | |
| 4 | # dmax is the max. bond length (in units l_min) | |
| 5 | dmax=1.7 | |
| 6 | # dmin_interspecies in the min. dist. between different vertex species (in units l_min) | |
| 7 | dmin_interspecies=1.2 | |
| 8 | # bending rigidity of the membrane (in units kT) | |
| 9 | xk0=10.0 | |
| 10 | # max step size (in units l_min) | |
| 11 | stepsize=0.15 | |
| 12 | ||
| 13 | # Pressure calculations | |
| 14 | # (pswitch=1: calc. p*dV energy contribution) | |
| 15 | pswitch = 0 | |
| 16 | # pressure difference: p_inside - p_outside (in units kT/l_min^3): | |
| 17 | pressure=0.0 | |
| 18 | ||
| 19 | #Constant volume constraint (0 disable constant volume, 1 enable wiht additional vertex move, 2 enable with epsvol) | |
| 20 | constvolswitch=0 | |
| 21 | constvolprecision=1e-14 | |
| 22 | ||
| 23 | #Constant area constraint (0 disable constant area, 2 enable constant area with epsarea) | |
| 24 | constareaswitch=0 | |
| 25 | ||
| 26 | ####### Polymer (brush) definitions ########### | |
| 27 | # npoly is a number of polymers attached to npoly distinct vertices on vesicle | |
| 28 | npoly=0 | |
| 29 | # nmono is a number of monomers in each polymer | |
| 30 | nmono=10 | |
| 31 | # Spring constant between monomers of the polymer | |
| 32 | k_spring=800 | |
| 33 | ||
| 34 | ####### Filament (inside the vesicle) definitions ########### | |
| 35 | # nfil is a number of filaments inside the vesicle | |
| 36 | nfil=0 | |
| 37 | # nfono is a number of monomers in each filament | |
| 38 | nfono=300 | |
| 39 | # Persistence lenght of the filaments (in units l_min) | |
| 40 | xi=0 | |
| 41 | ||
| 42 | ####### Nucleus (inside the vesicle) ########### | |
| 43 | # Radius of an impenetrable hard sphere inside the vesicle | |
| 44 | R_nucleus=0 | |
| 45 | ||
| 46 | ####### Cell definitions ############ | |
| 47 | nxmax=60 | |
| 48 | nymax=60 | |
| 49 | nzmax=60 | |
| 50 | ||
| 51 | ||
| 52 | ####### Program Control ############ | |
| 53 | #how many MC sweeps between subsequent records of states to disk | |
| 54 | #200000 | |
| 55 | mcsweeps=200 | |
| 56 | #how many initial mcsweeps*inititer MC sweeps before recording to disk? | |
| 57 | #2 | |
| 58 | inititer=10 | |
| 59 | #how many records do you want on the disk iteration are there in a run? | |
| 60 | #10000 | |
| 61 | iterations=100 | |
| 62 | ||
| 63 | ||
| 64 | ###### Spherical harmonics ########### | |
| 65 | # If 0 then spherical harmonics are not calculated at all. | |
| 66 | spherical_harmonics_coefficients=0 | |
| 67 | ||
| 68 | #shut up if we are using cluster!!! | |
| 69 | quiet=false | |
| 70 | ||
| 71 | #what type of multiprocessing? (*none, smp, cluster, distributed, cuda, auto) | |
| 72 | #currently only none makes sense. | |
| 73 | multiprocessing=none | |
| 74 | #how many cores are allowed to process in SMP? | |
| 75 | smp_cores=2 | |
| 76 | #how many nodes in cluster? | |
| 77 | cluster_nodes=50 | |
| 78 | #max number of processes in distributed (voluntary) environment | |
| 79 | distributed_processes=50 | |
| 80 | #cuda options??? | |
